I’ve (apparently) gotten past my issue with submitting jobs to the scheduler and have run into an issue with the stdout and stderr files not showing up. If I let cylc set the filenames by default I see the following in the job script:
# DIRECTIVES: #PBS -N L96.1.debug_submit/run7 #PBS -o cylc-run/debug_submit/run7/log/job/1/L96/01/job.out #PBS -e cylc-run/debug_submit/run7/log/job/1/L96/01/job.err
It looks like cylc is not picking up my home directory path. Is this a bug or is this configuration error on my part? If I specify the full path to a file in my flow.cyc using PBS directives it works without issue.